PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 917aa    MW: 101261 Da    PI: 5.8787
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133610.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK80.61.6e-25554633252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLg.............................vclTvLKriCRqyGIkRWPhRkiksl 52 
                     ek++sl++l+++Fs+++kdAAk+Lg                             vc+T+LKriCRq+GI+RWP+Rki+++
  XP_009133610.1 554 EKNVSLSVLQQHFSGSLKDAAKSLGgefstfsyvlmsfivgqtfltldfvsnlaVCPTTLKRICRQHGIMRWPSRKINKV 633
                     89****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151912.878543653IPR003035RWP-RK domain
PfamPF020421.7E-24556633IPR003035RWP-RK domain
SuperFamilySSF542774.25E-23807902No hitNo description
Gene3DG3DSA:3.10.20.2402.5E-24815896No hitNo description
SMARTSM006661.2E-25817899IPR000270PB1 domain
PROSITE profilePS5174523.091817899IPR000270PB1 domain
CDDcd064071.27E-36818898No hitNo description
PfamPF005642.7E-18818898IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 917 aa     Download sequence    Send to blast
MDSFSFGSGV RSLISDDMFN SSSNSELVNF DSFSTWCNSP SVSDVLFAQY GLSTSQSMPF  60
GAITSAHAPE LRAATLPGLT RSFHDMESSY YGEERPSLQE MISQFDHSLD SVQLSGKRRR  120
VANQKNGFPN LMNCTIPRSL SHSLDEKMLK ALSLFLESSG SGEGILAQVW TPIKIGDQHV  180
LSTCDQAYLL DPRLSQYREV SRKFTFASEA NQCSFPGLPG RVFISGVPEW TSNVVYYKTD  240
EYLRMKHAID NEVRGSIAIP ILEASGTTCC AVMELVTSKE KPNFDTEMDS VCRALQAVNL  300
RTSASPRPQF LSSNQRDALA EIQDVLRAVC HAHRLPLALA WIPCSYGKGG KNQSGVLCVE  360
ETACYVNDTE MEGFVHVCLE HCLREKEGIV GRAFVSNKPL FSSDVKAYDI SEYPLVQHAR  420
KYGLNAAVAI KLRSTYTGED DYILELFLPV SMKGSLEQQL LLDSLSGTMQ RICRTLRTVS  480
DVGEAKKEVS KTGVLNACSG NFQTMLSDSE LNSTRNIFSD MSSDKDNSST GSQGTYEQDM  540
SKARTPEKKK STTEKNVSLS VLQQHFSGSL KDAAKSLGGE FSTFSYVLMS FIVGQTFLTL  600
DFVSNLAVCP TTLKRICRQH GIMRWPSRKI NKVNRSLRKI QTVLDSVQGV EGGLKFDSAT  660
GEFVAVCPFI KELDTQKDPS SNVNNEHVRG HEDVAAQDAS FELLKAKSVD NEIKLEEDII  720
TNGSFMEVNA SGEQWAWMAE QSSFHCSEEK KNNGNLSSQA IRCSGSINEP NHSLSCRMSG  780
SSKGSGAVML RSSSTSMDDS NQVRTQKSNS SESGSTTLTV KATYREDTIR FKFEPSLGCS  840
QLYKEVGKRF KLQEESFQLK YLDDEEEWVM LVTDSDLQEC LEILYGMGKH TVKFLVRDLP  900
APIGSSAGSN CYLGTGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116120KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133610.10.0PREDICTED: protein NLP8-like isoform X2
SwissprotO228640.0NLP8_ARATH; Protein NLP8
TrEMBLM4C7X90.0M4C7X9_BRARP; Uncharacterized protein
STRINGBra000307.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein